AnnotateVid.Io
React (Next.js)
(Ongoing) An interactive platform where users can create, edit, and search for behaviors occurring in collections of videos curated by individuals or communities
Mark Fisher
Software engineer and genetics PhD focused on building tools for biologists, among other good causes.
- Current role
- Software Engineer at Symbiota
- Based in
- Portland, OR
- Focus areas
- Scientific software, data workflows and analysis, and community-driven products
- mark.fisher@ku.edu
About
The purpose of this site is to serve as a supplement to my resume by allowing me to showcase selected work and projects in one place.
Resume
You can view my full resume here.
Projects
Live deployment
cr_moth
Python, Jupyter notebooks
Repo: https://github.com/Atticus29/cr_moth
(Ongoing) Machine learning workflows for training Costa Rican moth detectors and classifiers.
mcfly
Python
Repo: https://github.com/Atticus29/mcfly
(Ongoing) A tool for correcting past coding mistakes in published scientific articles.
IGLToolKit
Java (Netbeans)
Repo: https://github.com/Atticus29/IGLToolKit
(2016) A GUI for processing data generated by Affymetrix Expression Console as well as some meta-data, rendering them as a prelminary Array Performance Summary (APS), and reporting other important information, such as whether any samples were given duplicate names and whether any errors or re-runs occurred at the fluidics station. Stripped of PHI and proprietary information of tools I created at OHSU.
HefPipe
Python, R
Repo: https://github.com/Atticus29/HefPipe
(2013) Published in Molecular Ecology Resources. A software analysis pipeline for heterozygosity-fitness correlations.